Fix tool disabling (#5585)

# Description of Changes

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Please provide a summary of the changes, including:

- What was changed
- Why the change was made
- Any challenges encountered

Closes #(issue_number)
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---

## Checklist

### General

- [ ] I have read the [Contribution
Guidelines](https://github.com/Stirling-Tools/Stirling-PDF/blob/main/CONTRIBUTING.md)
- [ ] I have read the [Stirling-PDF Developer
Guide](https://github.com/Stirling-Tools/Stirling-PDF/blob/main/devGuide/DeveloperGuide.md)
(if applicable)
- [ ] I have read the [How to add new languages to
Stirling-PDF](https://github.com/Stirling-Tools/Stirling-PDF/blob/main/devGuide/HowToAddNewLanguage.md)
(if applicable)
- [ ] I have performed a self-review of my own code
- [ ] My changes generate no new warnings

### Documentation

- [ ] I have updated relevant docs on [Stirling-PDF's doc
repo](https://github.com/Stirling-Tools/Stirling-Tools.github.io/blob/main/docs/)
(if functionality has heavily changed)
- [ ] I have read the section [Add New Translation
Tags](https://github.com/Stirling-Tools/Stirling-PDF/blob/main/devGuide/HowToAddNewLanguage.md#add-new-translation-tags)
(for new translation tags only)

### Translations (if applicable)

- [ ] I ran
[`scripts/counter_translation.py`](https://github.com/Stirling-Tools/Stirling-PDF/blob/main/docs/counter_translation.md)

### UI Changes (if applicable)

- [ ] Screenshots or videos demonstrating the UI changes are attached
(e.g., as comments or direct attachments in the PR)

### Testing (if applicable)

- [ ] I have tested my changes locally. Refer to the [Testing
Guide](https://github.com/Stirling-Tools/Stirling-PDF/blob/main/devGuide/DeveloperGuide.md#6-testing)
for more details.

app/core/src/main/java/stirling/software/SPDF/config/ExternalAppDepConfig.java

@@ -118,7 +118,8 @@ public class ExternalAppDepConfig {
 
             for (String group : affectedGroups) {
                 List<String> affectedFeatures = getAffectedFeatures(group);
-                endpointConfiguration.disableGroup(group);
+                endpointConfiguration.disableGroup(
+                        group, EndpointConfiguration.DisableReason.DEPENDENCY);
                 log.warn(
                         "Missing dependency: {} - Disabling group: {} (Affected features: {})",
                         command,
@@ -143,7 +144,8 @@ public class ExternalAppDepConfig {
                                     commandToGroupMapping.getOrDefault(
                                             command, List.of("Weasyprint"));
                             for (String group : affectedGroups) {
-                                endpointConfiguration.disableGroup(group);
+                                endpointConfiguration.disableGroup(
+                                        group, EndpointConfiguration.DisableReason.DEPENDENCY);
                             }
                             log.warn(
                                     "WeasyPrint version {} is below required {} - disabling"
@@ -172,7 +174,8 @@ public class ExternalAppDepConfig {
                             List<String> affectedGroups =
                                     commandToGroupMapping.getOrDefault(command, List.of("qpdf"));
                             for (String group : affectedGroups) {
-                                endpointConfiguration.disableGroup(group);
+                                endpointConfiguration.disableGroup(
+                                        group, EndpointConfiguration.DisableReason.DEPENDENCY);
                             }
                             log.warn(
                                     "qpdf version {} is below required {} - disabling group(s): {}",
@@ -226,7 +229,8 @@ public class ExternalAppDepConfig {
         int ec = runAndWait(List.of(python, "-c", "import cv2"), DEFAULT_TIMEOUT).exitCode();
         if (ec != 0) {
             List<String> openCVFeatures = getAffectedFeatures("OpenCV");
-            endpointConfiguration.disableGroup("OpenCV");
+            endpointConfiguration.disableGroup(
+                    "OpenCV", EndpointConfiguration.DisableReason.DEPENDENCY);
             log.warn(
                     "OpenCV not available in Python - Disabling OpenCV features: {}",
                     String.join(", ", openCVFeatures));
@@ -236,8 +240,10 @@ public class ExternalAppDepConfig {
     private void disablePythonAndOpenCV(String reason) {
         List<String> pythonFeatures = getAffectedFeatures("Python");
         List<String> openCVFeatures = getAffectedFeatures("OpenCV");
-        endpointConfiguration.disableGroup("Python");
-        endpointConfiguration.disableGroup("OpenCV");
+        endpointConfiguration.disableGroup(
+                "Python", EndpointConfiguration.DisableReason.DEPENDENCY);
+        endpointConfiguration.disableGroup(
+                "OpenCV", EndpointConfiguration.DisableReason.DEPENDENCY);
         log.warn(
                 "Missing dependency: Python (reason: {}) - Disabling Python features: {} and OpenCV"
                         + " features: {}",