possible fix permission issues and fix thread timing issues (#6061)

# Description of Changes

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Please provide a summary of the changes, including:

- What was changed
- Why the change was made
- Any challenges encountered

Closes #(issue_number)
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---

## Checklist

### General

- [ ] I have read the [Contribution
Guidelines](https://github.com/Stirling-Tools/Stirling-PDF/blob/main/CONTRIBUTING.md)
- [ ] I have read the [Stirling-PDF Developer
Guide](https://github.com/Stirling-Tools/Stirling-PDF/blob/main/devGuide/DeveloperGuide.md)
(if applicable)
- [ ] I have read the [How to add new languages to
Stirling-PDF](https://github.com/Stirling-Tools/Stirling-PDF/blob/main/devGuide/HowToAddNewLanguage.md)
(if applicable)
- [ ] I have performed a self-review of my own code
- [ ] My changes generate no new warnings

### Documentation

- [ ] I have updated relevant docs on [Stirling-PDF's doc
repo](https://github.com/Stirling-Tools/Stirling-Tools.github.io/blob/main/docs/)
(if functionality has heavily changed)
- [ ] I have read the section [Add New Translation
Tags](https://github.com/Stirling-Tools/Stirling-PDF/blob/main/devGuide/HowToAddNewLanguage.md#add-new-translation-tags)
(for new translation tags only)

### Translations (if applicable)

- [ ] I ran
[`scripts/counter_translation.py`](https://github.com/Stirling-Tools/Stirling-PDF/blob/main/docs/counter_translation.md)

### UI Changes (if applicable)

- [ ] Screenshots or videos demonstrating the UI changes are attached
(e.g., as comments or direct attachments in the PR)

### Testing (if applicable)

- [ ] I have tested my changes locally. Refer to the [Testing
Guide](https://github.com/Stirling-Tools/Stirling-PDF/blob/main/devGuide/DeveloperGuide.md#6-testing)
for more details.

docker/embedded/Dockerfile

@@ -91,6 +91,15 @@ ENV VERSION_TAG=$VERSION_TAG \
     _JVM_OPTS_BALANCED="-XX:+ExitOnOutOfMemoryError -XX:+HeapDumpOnOutOfMemoryError -XX:HeapDumpPath=/configs/heap_dumps -XX:+UseG1GC -XX:MaxGCPauseMillis=200 -XX:G1HeapRegionSize=4m -XX:G1PeriodicGCInterval=60000 -XX:+UseStringDeduplication -XX:+UseCompactObjectHeaders -XX:+ExplicitGCInvokesConcurrent -Dspring.threads.virtual.enabled=true -Djava.awt.headless=true" \
     _JVM_OPTS_PERFORMANCE="-XX:+ExitOnOutOfMemoryError -XX:+HeapDumpOnOutOfMemoryError -XX:HeapDumpPath=/configs/heap_dumps -XX:+UseShenandoahGC -XX:ShenandoahGCMode=generational -XX:+UseCompactObjectHeaders -XX:+UseStringDeduplication -XX:+AlwaysPreTouch -XX:+ExplicitGCInvokesConcurrent -Dspring.threads.virtual.enabled=true -Djava.awt.headless=true" \
     JAVA_CUSTOM_OPTS="" \
+    HOME=/home/stirlingpdfuser \
+    PUID=1000 \
+    PGID=1000 \
+    UMASK=022 \
+    STIRLING_TEMPFILES_DIRECTORY=/tmp/stirling-pdf \
+    TMPDIR=/tmp/stirling-pdf \
+    TEMP=/tmp/stirling-pdf \
+    TMP=/tmp/stirling-pdf \
+    DBUS_SESSION_BUS_ADDRESS=/dev/null \
     SAL_TMP=/tmp/stirling-pdf/libre
 
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